10x genomics visium platform (10X Genomics)

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10X Genomics 10x genomics visium platform
10x Genomics Visium Platform, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visium+platform/cellranger/pmc13197639-320-7-7
Average 86 stars, based on 1 article reviews

10x genomics visium platform - by Bioz Stars, 2026-09

86/100 stars

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Article Title: Interpretable, flexible and spatially aware integration of multiple spatial transcriptomics datasets from diverse sources.
Article Snippet: Human dorsolateral prefrontal cortex dataset profiled by Visium platform (https://research.libd.org/spatialLIBD/); Mouse brain sagittal anterior, sagittal posterior, and coronal sections profiled by Visium (https://www.10xgenomics.com/datasets); Mouse brain section profiled by MERFISH (https://doi.brainimagelibrary.org/doi/10.35077/act-bag); Mouse brain section profiled by Slide-seq V2 (https://singlecell.broadinstitute.org/single_cell); Mouse whole-embryo section profiled by seqFISH (https://crukci.shinyapps.io/SpatialMouseAtlas/); Mouse whole-embryo datasets across different developmental time points profiled by Stereo-seq (https://db.cngb.org/stomics/mosta/); Mouse hypothalamic preoptic region sections profiled by MERFISH (https://doi.org/10.5061/dryad.8t8s248); Mouse hippocampus region sections profiled by SRARmap PLUS (https://doi.org/10.5281/zenodo.7458952); Mouse skin sections during wound healing profiled by Visium (GSE178758); Human breast cancer sections profiled by Xenium (https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast); Mouse brain sections profiled by the ST platform (GSE147747).

Spatial Transcriptomics:

Article Title: Ischemic injury triggers a protective microglial phenotype in models of Aβ pathology.
Article Snippet: .. Spatial transcriptomics Spatial transcriptomics were carried out using the Visium platform (10x Genomics) following the manufacturer’s instructions. .. Briefly, the slide was processed by following the methanol fixation, Immunofluorescence Staining & Imaging for Visium Spatial Protocols (CG000312, 10x Genomics).

Article Title: Well-ST-seq: Cost-Effective and Near-Cellular Spatial Transcriptomics Using Deterministic Barcoded Bead Arrays.
Article Snippet: Spatial transcriptomic technologies are promising tools for elucidating fine anatomical profiles of tissues.. For methods that rely on deterministic probe arrays, balancing spatial resolution, cost, and transcript-capture sensitivity is crucial to advancing spatial transcriptomics in both basic research and clinical applications.. Here we present Well-ST-seq, a near-cellularresolution platform that integrates microwell-assembled hydrogel bead carriers with combinatorial microfluidic indexing to generate predefined spatial barcode arrays.

Article Title: Retinoic acid drives cell fate specification, maturation and retinal regionality in human retinal organoids.
Article Snippet: .. Number of annotated cells per treatment after filtering Cell numbers per treatment after filtering Cell Type BMS RA- RA1 RA10 Amacrine Cell 686 636 769 630 Bipolar Cell 1053 999 504 335 Cone 1327 2224 1668 1603 Horizontal Cell 126 201 237 366 Müller Glia 1234 1724 2180 2218 Retinal Ganglion Cell 176 133 254 349 Rod 627 1462 1308 1044 RPC 204 237 675 619 RPE 69 27 44 25 Sample, library preparation and data pre-processing for spatial transcriptomics For the Visium platform (10x Genomics; PN-1000187) differentiated hROs were collected at 10 weeks in RA- condition (no exogenous RA added at this point) from two PSC lines (sample 1 and sample 2) and were analysed across two organoids sections in different z positions (A and B). ..

Article Title: Cardiac immunity and heart repair: Mechanism, challenge, and future direction
Article Snippet: .. After 10x Genomics acquired the original Spatial Transcriptomics technology and launched the Visium platform in 2019, this ST technology rapidly advanced and was widely adopted across numerous fields. ..

Article Title: Remodeling lesions locate at sites of strong extravillous trophoblast invasion and are associated with neutrophil presence in the human first-trimester decidua.
Article Snippet: .. Spatial transcriptomics maps the tissue structure, the EVT-invaded regions, and immunomodulating mechanisms To gain deeper insight into decidual architecture, spatial transcriptomics using the Visium platform from 10x Genomics was performed on four decidua sections (matched decidua basalis and parietalis from two different donors, annotated with the defined areas of the decidua). ..

Article Title: Ecotypes of triple-negative breast cancer in response to chemotherapy.
Article Snippet: .. Visium spatial transcriptomics experiments were performed using the Visium Platform (10X Genomics) following the manufacturer’s protocol with a minor modification based on the recommendations in the Tissue Optimization protocol (10X protocol no. CG000238). ..

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Article Title: An integrative single-nucleus multiomic atlas of the human left ventricle identifies gene regulatory network dynamics across cardiac development, aging, and disease.
Article Snippet: .. To address this, we analyzed spatial transcriptomic datasets from recently published studies of non-diseased and AMI donors generated using the Visium platform from 10X Genomics (Fig. 6a) [11, 16]. ..

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